DOCUMENTATION: Better npm run doc, plus minor folder reorganization (#693)

src/Documentation/doc/basic/reputation.md

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+# Reputation
+
+In order to acquire [Augmentations](augmentations.md) from [Factions](factions.md), you need to earn their trust.
+
+This can be done in a variety of ways, but the most common is offering your services to a [Faction](faction.md).
+Another option is to give them intel from [Infiltrations](infiltration.md).
+
+When installing [Augmentations](augmentations.md), all your reputation gets converted to favor.
+Favor increases the rate at which reputation is gained with that faction.
+
+With enough favor, donations are unlocked.
+Donations allow you to spend money to acquire reputation directly.
+Without working for the faction.
+This feature is particularily useful when a very large amount of reputation is needed for an augmentation.